Novae: a graph-based foundation model for spatial transcriptomics data

7.4
来源: Nature 关键字: deep learning brain science
发布时间: 2025-12-11 03:40
摘要:

Novae is a novel graph-based foundation model designed for spatial transcriptomics, significantly enhancing the analysis of gene expression in various tissues. Trained on a dataset of nearly 30 million cells, it allows for zero-shot domain inference and effectively corrects batch effects. The model supports multiple downstream tasks, making it a versatile tool for biomedical research, particularly in understanding tissue microenvironments and disease progression.

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关键证据

Novae is trained on a large dataset of nearly 30 million cells across 18 tissues.
The model enables zero-shot domain inference across multiple gene panels, tissues, and technologies.
It provides a robust tool for advancing spatial transcriptomics and its applications in biomedical research.

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Novae is a novel graph-based foundation model designed for spatial transcriptomics, significantly enhancing the analysis of gene expression in various tissues. Trained on a dataset of nearly 30 million cells, it allows for zero-shot domain inference and effectively corrects batch effects. The model supports multiple downstream tasks, making it a versatile tool for biomedical research, particularly in understanding tissue microenvironments and disease progression.

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